Computational Pathology

Report on Current Developments in Computational Pathology

General Direction of the Field

The field of computational pathology is witnessing a significant shift towards the integration of advanced machine learning techniques, particularly large vision-language models and foundation models, to enhance diagnostic accuracy and efficiency. Recent developments emphasize the use of domain-specific datasets and models that can handle the complexity and scale of whole slide images (WSIs), which are crucial for accurate pathology analysis.

One of the key trends is the adoption of multi-modal learning approaches that combine visual information with textual data, enabling more nuanced understanding and interpretation of pathological images. This is evident in the use of large language-vision assistants and prompt tuning methods that leverage prior knowledge from both visual and textual modalities. These methods are designed to handle the multi-scale and contextual complexities of WSIs, which are essential for accurate classification and diagnosis.

Another significant development is the application of semi-weakly supervised learning techniques, which aim to address the challenges posed by the scarcity of manual annotations in WSIs. Techniques such as adaptive pseudo bag augmentation and feature augmentation are being explored to improve model performance by enhancing data diversity and reducing label noise.

Noteworthy Innovations

  • PA-LLaVA: A Large Language-Vision Assistant for Human Pathology Image Understanding - This model demonstrates superior performance in both supervised and zero-shot VQA tasks, highlighting the potential of large vision-language models in computational pathology.
  • Attention Is Not What You Need: Revisiting Multi-Instance Learning for Whole Slide Image Classification - The proposed FocusMIL method offers a simpler yet effective alternative to attention-based methods, significantly outperforming baselines in patch-level classification tasks.
  • Screen Them All: High-Throughput Pan-Cancer Genetic and Phenotypic Biomarker Screening from H&E Whole Slide Images - This system leverages a foundation model to predict a wide range of clinically relevant molecular biomarkers across cancer types, demonstrating the potential of AI in guiding therapy selection and improving treatment efficacy.
  • Enhanced Cascade Prostate Cancer Classifier in mp-MRI Utilizing Recall Feedback Adaptive Loss and Prior Knowledge-Based Feature Extraction - This method integrates clinical prior information and addresses data imbalance, achieving high accuracy and recall rates in prostate cancer classification.
  • MSCPT: Few-shot Whole Slide Image Classification with Multi-scale and Context-focused Prompt Tuning - This method effectively leverages multi-scale and contextual information in WSIs, demonstrating powerful performance in few-shot classification tasks.

These innovations not only advance the field of computational pathology but also pave the way for more accurate and efficient diagnostic tools that can be integrated into clinical workflows.

Sources

PA-LLaVA: A Large Language-Vision Assistant for Human Pathology Image Understanding

Attention Is Not What You Need: Revisiting Multi-Instance Learning for Whole Slide Image Classification

Advances in Multiple Instance Learning for Whole Slide Image Analysis: Techniques, Challenges, and Future Directions

Screen Them All: High-Throughput Pan-Cancer Genetic and Phenotypic Biomarker Screening from H&E Whole Slide Images

Enhanced Cascade Prostate Cancer Classifier in mp-MRI Utilizing Recall Feedback Adaptive Loss and Prior Knowledge-Based Feature Extraction

Dataset Distillation for Histopathology Image Classification

MSCPT: Few-shot Whole Slide Image Classification with Multi-scale and Context-focused Prompt Tuning

Bioimpedance a Diagnostic Tool for Tobacco Induced Oral Lesions: a Mixed Model cross-sectional study

AI in radiological imaging of soft-tissue and bone tumours: a systematic review evaluating against CLAIM and FUTURE-AI guidelines

Whole Slide Image Classification of Salivary Gland Tumours

Wave-LSTM: Multi-scale analysis of somatic whole genome copy number profiles

A New Era in Computational Pathology: A Survey on Foundation and Vision-Language Models

MergeUp-augmented Semi-Weakly Supervised Learning for WSI Classification