Optimization and Generative Modeling Innovations

Advances in Optimization and Generative Modeling for Complex Systems

Recent developments in the field have seen significant advancements in optimization techniques and generative models, particularly tailored for complex systems and high-dimensional data. The focus has been on enhancing robustness and efficiency in the presence of heavy-tailed noise, as well as improving the accuracy and diversity of generated structures in biomolecular design.

Optimization Techniques: There is a notable shift towards developing unified frameworks for stochastic gradient descent (SGD) methods that can handle heavy-tailed noise without relying on specific nonlinearities. These frameworks offer high-probability guarantees and improved convergence rates, particularly for non-convex and strongly convex costs. Additionally, novel stochastic optimizers like FINDER are being proposed to bridge global search with local convergence, showing promise in large-dimensional optimization problems, including deep network training.

Generative Models: In the realm of generative models, there is a growing emphasis on structure-informed approaches for antibody design and optimization. These methods leverage retrieval-augmented diffusion frameworks to guide the generative process with structural constraints, leading to more natural and optimized antibody sequences. Furthermore, advancements in flow matching techniques are being applied to model transition dynamics in complex systems, offering a data-driven approach to simulate probable paths between metastable states.

Noteworthy Papers:

  • A unified framework for nonlinear SGD methods provides high-probability guarantees and improved convergence rates, especially for heavy-tailed noise.
  • A novel stochastic optimizer, FINDER, demonstrates superior performance in large-dimensional optimization problems, including deep network training.
  • Retrieval-augmented diffusion models for antibody design show significant improvements in generating optimized and natural antibody sequences.
  • Generalized flow matching techniques offer a data-driven approach to simulate transition dynamics in complex systems, validated on both synthetic and real-world molecular systems.
  • ADAM-SINDy introduces an efficient optimization framework for identifying parameterized nonlinear dynamical systems, demonstrating significant improvements in system identification.

Sources

Nonlinear Stochastic Gradient Descent and Heavy-tailed Noise: A Unified Framework and High-probability Guarantees

Stochastic Quasi-Newton Optimization in Large Dimensions Including Deep Network Training

Retrieval Augmented Diffusion Model for Structure-informed Antibody Design and Optimization

Generalized Flow Matching for Transition Dynamics Modeling

Large Deviations and Improved Mean-squared Error Rates of Nonlinear SGD: Heavy-tailed Noise and Power of Symmetry

ADAM-SINDy: An Efficient Optimization Framework for Parameterized Nonlinear Dynamical System Identification

Gradient Normalization with(out) Clipping Ensures Convergence of Nonconvex SGD under Heavy-Tailed Noise with Improved Results

Efficient Antibody Structure Refinement Using Energy-Guided SE(3) Flow Matching

Governing equation discovery of a complex system from snapshots

Error Feedback under $(L_0,L_1)$-Smoothness: Normalization and Momentum

Reinforcement learning on structure-conditioned categorical diffusion for protein inverse folding

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